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Cytoscape (Network) templates

Gene Interaction Network

Interactive force-directed gene/protein interaction network.

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{
  "elements": [
    {"data":{"id":"TP53","label":"TP53"}},
    {"data":{"id":"MDM2","label":"MDM2"}},
    {"data":{"id":"MDM4","label":"MDM4"}},
    {"data":{"id":"CDKN2A","label":"CDKN2A"}},
    {"data":{"id":"ATM","label":"ATM"}},
    {"data":{"id":"BAX","label":"BAX"}},
    {"data":{"id":"BCL2","label":"BCL2"}},
    {"data":{"id":"CASP3","label":"CASP3"}},
    {"data":{"source":"TP53","target":"MDM2","label":"activates"}},
    {"data":{"source":"MDM2","target":"TP53","label":"inhibits"}},
    {"data":{"source":"MDM4","target":"TP53","label":"inhibits"}},
    {"data":{"source":"CDKN2A","target":"MDM2","label":"inhibits"}},
    {"data":{"source":"ATM","target":"TP53","label":"phosphorylates"}},
    {"data":{"source":"TP53","target":"BAX","label":"upregulates"}},
    {"data":{"source":"BAX","target":"CASP3","label":"activates"}},
    {"data":{"source":"BCL2","target":"BAX","label":"inhibits"}}
  ],
  "layout":{"name":"cose","animate":false,"nodeRepulsion": 4000}
}