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Cytoscape (Network) templates

Biology — Gene Regulatory Network

Activators and repressors controlling gene expression.

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{
  "elements":[
    {"data":{"id":"TF1","label":"Activator"}},
    {"data":{"id":"TF2","label":"Repressor"}},
    {"data":{"id":"G1","label":"Gene A"}},
    {"data":{"id":"G2","label":"Gene B"}},
    {"data":{"id":"G3","label":"Gene C"}},
    {"data":{"source":"TF1","target":"G1","label":"activates"}},
    {"data":{"source":"TF1","target":"G2","label":"activates"}},
    {"data":{"source":"TF2","target":"G3","label":"represses"}},
    {"data":{"source":"G1","target":"TF2","label":"encodes"}},
    {"data":{"source":"G2","target":"G3","label":"regulates"}}
  ],
  "layout":{"name":"cose","animate":false,"nodeRepulsion":5000}
}