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Cytoscape (Network) templates

Biology — Gut Microbiome Interactions

Host–microbe and microbe–microbe interactions.

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{
  "elements":[
    {"data":{"id":"host","label":"Host (gut lining)"}},
    {"data":{"id":"fiber","label":"Dietary fibre"}},
    {"data":{"id":"bact","label":"Bacteroides"}},
    {"data":{"id":"firm","label":"Firmicutes"}},
    {"data":{"id":"scfa","label":"Short-chain fatty acids"}},
    {"data":{"source":"fiber","target":"bact","label":"ferment"}},
    {"data":{"source":"fiber","target":"firm","label":"ferment"}},
    {"data":{"source":"bact","target":"scfa"}},
    {"data":{"source":"firm","target":"scfa"}},
    {"data":{"source":"scfa","target":"host","label":"nourish & signal"}}
  ],
  "layout":{"name":"cose","animate":false,"nodeRepulsion":4500}
}