Skip to content
Cytoscape (Network) templates

Protein-Protein Interactome (toy)

Small PPI subnetwork around a hub protein (TP53-like).

Template previewCytoscape (Network)
Rendering…

Make it your own.

{
  "elements": [
    {"data":{"id":"TP53","label":"TP53"}},
    {"data":{"id":"MDM2","label":"MDM2"}},
    {"data":{"id":"BAX","label":"BAX"}},
    {"data":{"id":"BCL2","label":"BCL2"}},
    {"data":{"id":"PUMA","label":"PUMA"}},
    {"data":{"id":"ATM","label":"ATM"}},
    {"data":{"id":"CHK2","label":"CHK2"}},
    {"data":{"id":"p21","label":"p21"}},
    {"data":{"id":"CDK2","label":"CDK2"}},
    {"data":{"id":"CycE","label":"CycE"}},
    {"data":{"source":"TP53","target":"MDM2"}},
    {"data":{"source":"MDM2","target":"TP53"}},
    {"data":{"source":"TP53","target":"BAX"}},
    {"data":{"source":"TP53","target":"PUMA"}},
    {"data":{"source":"BAX","target":"BCL2"}},
    {"data":{"source":"ATM","target":"CHK2"}},
    {"data":{"source":"CHK2","target":"TP53"}},
    {"data":{"source":"TP53","target":"p21"}},
    {"data":{"source":"p21","target":"CDK2"}},
    {"data":{"source":"CycE","target":"CDK2"}}
  ],
  "layout":{"name":"cose","animate":false},
  "style":[
    {"selector":"node","style":{"background-color":"#0ea5e9","label":"data(label)","color":"#0f172a","font-size":11,"text-valign":"center","text-halign":"center","width":50,"height":50}},
    {"selector":"node[id='TP53']","style":{"background-color":"#dc2626","width":70,"height":70,"font-size":13}},
    {"selector":"edge","style":{"width":2,"line-color":"#94a3b8","target-arrow-color":"#94a3b8","target-arrow-shape":"triangle","curve-style":"bezier"}}
  ]
}