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Cytoscape (Network) templates

Biology — DNA Repair Pathways

Sensing damage and choosing a repair route.

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{
  "elements":[
    {"data":{"id":"damage","label":"DNA damage"}},
    {"data":{"id":"sense","label":"Sensors (ATM/ATR)"}},
    {"data":{"id":"arrest","label":"Cell-cycle arrest (p53)"}},
    {"data":{"id":"ber","label":"Base excision repair"}},
    {"data":{"id":"ner","label":"Nucleotide excision repair"}},
    {"data":{"id":"mmr","label":"Mismatch repair"}},
    {"data":{"id":"fixed","label":"DNA restored"}},
    {"data":{"id":"apop","label":"Apoptosis if unrepairable"}},
    {"data":{"source":"damage","target":"sense"}},
    {"data":{"source":"sense","target":"arrest"}},
    {"data":{"source":"arrest","target":"ber"}},
    {"data":{"source":"arrest","target":"ner"}},
    {"data":{"source":"arrest","target":"mmr"}},
    {"data":{"source":"ber","target":"fixed"}},
    {"data":{"source":"ner","target":"fixed"}},
    {"data":{"source":"mmr","target":"fixed"}},
    {"data":{"source":"arrest","target":"apop"}}
  ],
  "layout":{"name":"breadthfirst","directed":true}
}